sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2284-A2332
X
>1YIT-01074-01207
X
>2NZ4-Q104-Q115
X
>1QF6-B11-B22
X
>1YJN-01378-01636
X
>3CMA-01378-01636
X
>1KXK-A25-A46
X
>3R8S-A754-A741
X
>2H0X-B3-A15
X
>1VQ4-0810-0778
X
>1YJN-063-094
X
</seq>
<hsp>
0 1:0.831692886072
0 2:0.999994383393
0 3:0.98529348561
0 4:0.728021635765
0 5:0.713360101208
0 6:0.94887968368
0 7:0.901003270754
0 8:0.769609282375
0 9:0.74436630093
0 10:0.755869315819
1 2:0.410977115176
1 3:0.489358909135
1 4:0.454128742257
1 5:0.417076324216
1 6:0.615869265772
1 7:0.433285370622
1 8:0.292624030009
1 9:0.538032324936
1 10:0.64164568573
2 3:0.18275219156
2 4:0.598545280761
2 5:0.468355695669
2 6:0.450120591228
2 7:0.326547285071
2 8:0.354739978539
2 9:0.509029512432
2 10:0.580059712705
3 4:0.601743317689
3 5:0.465606943768
3 6:0.408524901989
3 7:0.316544026078
3 8:0.340910538055
3 9:0.430835516525
3 10:0.488326856949
4 5:0.174143800627
4 6:0.443363365012
4 7:0.359115842796
4 8:0.342733350109
4 9:0.348288877692
4 10:0.390125066787
5 6:0.352870013167
5 7:0.267241169299
5 8:0.27135053199
5 9:0.282712912147
5 10:0.315057521506
6 7:0.215609328648
6 8:0.409865696961
6 9:0.340489910479
6 10:0.365988792816
7 8:0.246509576205
7 9:0.300590729239
7 10:0.374364895543
8 9:0.262663242122
8 10:0.380734584014
9 10:0.147139712362
</hsp>