sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2UUA-A1123-A1122
X
>1HR2-A114-A113
X
>3CCS-01065-01064
X
>2OTL-01065-01064
X
>3CCL-01065-01064
X
>3CCR-01065-01064
X
>3CD6-01065-01064
X
>3G71-01065-01064
X
>1VQ6-01065-01064
X
</seq>
<hsp>
0 1:0.978659473784
0 2:0.385715683565
0 3:0.424511398795
0 4:0.403458401508
0 5:0.417593847097
0 6:0.380914087467
0 7:0.41724479027
0 8:0.412880422555
1 2:0.97962771812
1 3:0.999157047077
1 4:0.970980902199
1 5:1.0
1 6:0.95207421246
1 7:0.974911394675
1 8:0.982038715874
2 3:0.127187054311
2 4:0.109831976036
2 5:0.0931428018089
2 6:0.0859860916519
2 7:0.0940443971314
2 8:0.0781625781943
3 4:0.0499154985959
3 5:0.165689122613
3 6:0.111069685559
3 7:0.0992265911531
3 8:0.0906034792264
4 5:0.158756805213
4 6:0.0724840919858
4 7:0.0732901407052
4 8:0.064061856298
5 6:0.147873302271
5 7:0.120927249469
5 8:0.111836313891
6 7:0.0946620052158
6 8:0.0592735889599
7 8:0.0555919283669
</hsp>