sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-11246-12609
X
>3U5H-51252-52610
X
>3U5F-6441-6439
X
>3OHJ-A1081-A1941
X
>3KNI-A1087-A1940
X
>2ZJR-X1045-X1890
X
</seq>
<hsp>
0 1:0.291805084022
0 2:0.823436207841
0 3:0.810549219693
0 4:0.99524723325
0 5:0.794048473684
1 2:0.775508428273
1 3:0.679539166073
1 4:0.999997492566
1 5:0.661059552205
2 3:0.306174263026
2 4:0.76541458547
2 5:0.611212318704
3 4:0.715800443962
3 5:0.391405379207
4 5:0.55709500875
</hsp>