sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1G-A461-A460
X
>3F1E-A461-A460
X
>3F1G-A1079-A1061
X
>3F1E-A1079-A1061
X
>3OI1-A2289-A2288
X
>3OHZ-A2289-A2288
X
>2ZJR-X2246-X2245
X
</seq>
<hsp>
0 1:0.0172853332509
0 2:0.973479267377
0 3:0.980053681904
0 4:0.983284039673
0 5:0.997295170917
0 6:0.959109303633
1 2:0.976995567984
1 3:0.983462401122
1 4:0.986249944333
1 5:1.0
1 6:0.960156459911
2 3:0.0156073577116
2 4:0.537576598037
2 5:0.541869603032
2 6:0.838869046096
3 4:0.538724218326
3 5:0.542561092858
3 6:0.839239393848
4 5:0.0353155198676
4 6:0.379100336811
5 6:0.381766555068
</hsp>