sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-0404-0186
X
>3RKF-C31-C8
X
>1YJ9-0404-0186
X
>3OHK-A872-A874
X
>3OHJ-A872-A874
X
>3FU2-A10-A13
X
>3F1H-A884-A886
X
>3F1F-A884-A886
X
>3OHZ-A872-A874
X
>3CME-0945-0948
X
</seq>
<hsp>
0 1:0.923075716291
0 2:0.535480534872
0 3:0.409540072871
0 4:0.42157818987
0 5:0.274233197266
0 6:0.472921475267
0 7:0.473385575024
0 8:0.400609983597
0 9:0.255410034031
1 2:0.979028283729
1 3:0.967099061416
1 4:0.966733540563
1 5:0.956126587093
1 6:0.997068823934
1 7:1.0
1 8:0.835174327181
1 9:0.911025782739
2 3:0.435499212235
2 4:0.446015361578
2 5:0.586579678851
2 6:0.841970000644
2 7:0.83591287664
2 8:0.455933014523
2 9:0.532385525584
3 4:0.0470668468626
3 5:0.418608003488
3 6:0.614293966138
3 7:0.615935801146
3 8:0.244851237112
3 9:0.31323173019
4 5:0.440226677778
4 6:0.596273930598
4 7:0.59771474917
4 8:0.224425286767
4 9:0.309409769103
5 6:0.577692229912
5 7:0.574242663221
5 8:0.449010624665
5 9:0.292737522199
6 7:0.0330012025911
6 8:0.490721060915
6 9:0.374464189416
7 8:0.492303696007
7 9:0.368415301324
8 9:0.257576386512
</hsp>