sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2VQF-A1133-A1155
X
>3U5B-21161-21442
X
>1K8A-A817-A1968
X
>1JJ2-0817-01968
X
>2OTL-0817-01968
X
>3CCQ-0817-01968
X
</seq>
<hsp>
0 1:0.83153185849
0 2:0.999998165197
0 3:0.957076108846
0 4:0.924995203231
0 5:0.942801227595
1 2:0.441833959905
1 3:0.422952398642
1 4:0.414592729075
1 5:0.434990647959
2 3:0.0730757240421
2 4:0.102172643912
2 5:0.0899891310637
3 4:0.0438441766283
3 5:0.0569518392992
4 5:0.0424825533598
</hsp>