sequences=20
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1XMQ-A1257-A1326
X
>1Q93-C15-B3
X
>3U5B-2424-2388
X
>3CCJ-02719-01747
X
>2VQE-A1262-A1331
X
>3U5F-6421-6385
X
>1N32-A1262-A1331
X
>2UUA-A1262-A1331
X
>2UXC-A1262-A1331
X
>2VQF-A1262-A1331
X
>2VQF-A343-A307
X
>2UUB-A1262-A1331
X
>1N32-A343-A307
X
>3F1E-A343-A307
X
>3F1G-A343-A307
X
>2VQE-A343-A307
X
>2UUB-A343-A307
X
>1XMQ-A343-A307
X
>1FJG-A343-A307
X
>2UXC-A343-A307
X
</seq>
<hsp>
0 1:0.600290155065
0 2:0.327833395206
0 3:0.864243632624
0 4:0.109402069163
0 5:0.360512967603
0 6:0.102825915962
0 7:0.1450920059
0 8:0.140045466034
0 9:0.165443536594
0 10:0.402078452853
0 11:0.194762395191
0 12:0.409689472288
0 13:0.566223993525
0 14:0.567384579267
0 15:0.400516033459
0 16:0.413786929349
0 17:0.4255784327
0 18:0.464041910659
0 19:0.423056712737
1 2:0.508673296111
1 3:0.564693987295
1 4:0.60709780844
1 5:0.477865216914
1 6:0.587752230903
1 7:0.492641603404
1 8:0.520365987671
1 9:0.512906954435
1 10:0.451828141504
1 11:0.467604940031
1 12:0.453325608405
1 13:0.682290033545
1 14:0.680416288452
1 15:0.468196316252
1 16:0.440508411086
1 17:0.409344079443
1 18:0.441963405246
1 19:0.511841459854
2 3:0.745976891465
2 4:0.2827166112
2 5:0.0701683171746
2 6:0.318176278585
2 7:0.325798461494
2 8:0.294798339317
2 9:0.281713080668
2 10:0.161706322047
2 11:0.269755214975
2 12:0.173507803036
2 13:0.36767511913
2 14:0.367251774421
2 15:0.171616297926
2 16:0.168719325087
2 17:0.192288210688
2 18:0.209025016304
2 19:0.256512910609
3 4:0.845799575173
3 5:0.69818704605
3 6:0.809704089087
3 7:0.745644002393
3 8:0.743500112566
3 9:0.713121786555
3 10:0.748147244461
3 11:0.683659501473
3 12:0.751284803123
3 13:1.0
3 14:0.999006431489
3 15:0.760870457811
3 16:0.722869030791
3 17:0.702721098049
3 18:0.732491023788
3 19:0.827714870923
4 5:0.310541407814
4 6:0.0842643571092
4 7:0.192880241957
4 8:0.13667683465
4 9:0.190278087825
4 10:0.35604121288
4 11:0.184125607064
4 12:0.357566685388
4 13:0.508886698067
4 14:0.510287761819
4 15:0.348165499151
4 16:0.361879247971
4 17:0.376405402188
4 18:0.41471931786
4 19:0.364077911579
5 6:0.341180674637
5 7:0.34319699388
5 8:0.310032951306
5 9:0.297110621858
5 10:0.173913036651
5 11:0.274255479587
5 12:0.17785616834
5 13:0.392173839109
5 14:0.391574760458
5 15:0.184626160895
5 16:0.165992474337
5 17:0.181918751549
5 18:0.202670582464
5 19:0.272612996719
6 7:0.138890470383
6 8:0.0773455802466
6 9:0.146621005018
6 10:0.38347648659
6 11:0.140461490681
6 12:0.390536994634
6 13:0.567580602447
6 14:0.56883730223
6 15:0.377645281831
6 16:0.389365537663
6 17:0.398758681793
6 18:0.440345017137
6 19:0.39729842656
7 8:0.0878048430361
7 9:0.0946085957787
7 10:0.37798704748
7 11:0.10558567565
7 12:0.389328314676
7 13:0.60202196436
7 14:0.602533778906
7 15:0.381613015048
7 16:0.38408355301
7 17:0.386679812517
7 18:0.435904953527
7 19:0.417797827624
8 9:0.0959887231001
8 10:0.351727995741
8 11:0.0672282305867
8 12:0.361271085654
8 13:0.568951608746
8 14:0.56977710499
8 15:0.349879547917
8 16:0.355313806592
8 17:0.360137638312
8 18:0.406005593491
8 19:0.381327644782
9 10:0.36219222145
9 11:0.0932024685777
9 12:0.377354328679
9 13:0.594140277782
9 14:0.594704224729
9 15:0.368385363083
9 16:0.367714299875
9 17:0.374664550245
9 18:0.417237933461
9 19:0.421320704016
10 11:0.321400313774
10 12:0.0500276765207
10 13:0.29312009781
10 14:0.291964174516
10 15:0.0337630328185
10 16:0.045271488075
10 17:0.0668347982711
10 18:0.0854217969757
10 19:0.133464390763
11 12:0.331649044367
11 13:0.56277785099
11 14:0.563252697849
11 15:0.323044820044
11 16:0.3207668614
11 17:0.322138627283
11 18:0.371204031489
11 19:0.366331306535
12 13:0.277112140619
12 14:0.27594625239
12 15:0.0489596654553
12 16:0.0365241586695
12 17:0.0597863938603
12 18:0.0984785761135
12 19:0.12303794864
13 14:0.00642404209759
13 15:0.280082036519
13 16:0.304076291636
13 17:0.324543393499
13 18:0.299078796486
13 19:0.245264175124
14 15:0.279128121819
14 16:0.302962412631
14 17:0.323207374622
14 18:0.297574434432
14 19:0.244908940542
15 16:0.0531655737113
15 17:0.0729837571202
15 18:0.0900661765134
15 19:0.104940288764
16 17:0.0402493396065
16 18:0.088779917628
16 19:0.141072859716
17 18:0.0803301669363
17 19:0.147763012367
18 19:0.15780114394
</hsp>