sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-52500-52415
X
>2J02-A372-A59
X
>2J00-A372-A59
X
>3R8T-A2369-A2285
X
>3R8S-A2370-A2286
X
>3U5D-12499-12414
X
>3R8N-A380-A62
X
>3F1G-A372-A59
X
>3F1E-A372-A59
X
>1XMQ-A372-A59
X
>2UXC-A372-A59
X
>2VQF-A372-A59
X
>2VQE-A372-A59
X
>1N32-A372-A59
X
>2UUA-A372-A59
X
>1FJG-A372-A59
X
</seq>
<hsp>
0 1:0.761496748107
0 2:0.762982144401
0 3:0.315047265765
0 4:0.226073745848
0 5:0.133562434979
0 6:0.810951120579
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0 14:0.760303431543
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1 10:0.235892481525
1 11:0.217344327298
1 12:0.225497959144
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1 14:0.201172821614
1 15:0.290108721239
2 3:0.919101078777
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3 12:1.0
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8 9:0.280284690081
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12 13:0.269500862591
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12 15:0.174862991926
13 14:0.205905484513
13 15:0.232894680328
14 15:0.181257964548
</hsp>