sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A1822-A1802
X
>3F1F-A1822-A1802
X
>3R8T-A1812-A1792
X
>3IVN-A21-A48
X
>2EET-A20-A47
X
>3GAO-A20-A47
X
>2EES-A20-A47
X
>2XNZ-A19-A46
X
>2B57-A19-A46
X
</seq>
<hsp>
0 1:0.0124129412545
0 2:0.158370417364
0 3:0.994581990809
0 4:0.982766958087
0 5:0.982053796146
0 6:0.989819149009
0 7:0.960614304751
0 8:0.952250975038
1 2:0.162660141919
1 3:1.0
1 4:0.98868858984
1 5:0.987838270466
1 6:0.995544346055
1 7:0.96634037052
1 8:0.958062940867
2 3:0.976590862672
2 4:0.951603982833
2 5:0.96360165962
2 6:0.960671668327
2 7:0.931142657382
2 8:0.930988416957
3 4:0.151303705654
3 5:0.121569378965
3 6:0.141315880493
3 7:0.16618050418
3 8:0.148447698346
4 5:0.111522368592
4 6:0.0378578281059
4 7:0.0675660222571
4 8:0.10528403033
5 6:0.103251387917
5 7:0.105699611574
5 8:0.0476029589075
6 7:0.0508358010016
6 8:0.0972123275049
7 8:0.0783865174696
</hsp>