sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A1594-A1964
X
>3U5H-51836-52202
X
>3U5D-11830-12198
X
>3R8S-A1647-A2042
X
>3OGE-A587-A283
X
>3OGY-A587-A283
X
>2J02-A587-A283
X
>2J00-A587-A283
X
</seq>
<hsp>
0 1:0.410759573158
0 2:0.264205586102
0 3:0.302184840062
0 4:0.986799094646
0 5:0.974175565785
0 6:0.947317347366
0 7:1.0
1 2:0.294673032122
1 3:0.262053579884
1 4:0.810423016183
1 5:0.797396421843
1 6:0.768435186418
1 7:0.823268461234
2 3:0.105379755587
2 4:0.928672008029
2 5:0.916505863484
2 6:0.894772467611
2 7:0.950581522083
3 4:0.872729305063
3 5:0.860071161525
3 6:0.839261106733
3 7:0.899449818018
4 5:0.0200012684316
4 6:0.0758626699006
4 7:0.10138258703
5 6:0.0671004797844
5 7:0.102870494341
6 7:0.0758377513863
</hsp>