sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CME-0109-0102
X
>1VQK-0109-0102
X
>1VQP-0109-0102
X
>1VQL-0109-0102
X
>3CCL-0109-0102
X
>3CCQ-0109-0102
X
>3CCV-0109-0102
X
>1FFK-0109-0102
X
</seq>
<hsp>
0 1:0.626736009619
0 2:0.638412372418
0 3:0.581682989038
0 4:0.655167564651
0 5:0.811360534968
0 6:0.63608031228
0 7:0.893306807102
1 2:0.343025219545
1 3:0.217899579651
1 4:0.719612180158
1 5:0.834705419602
1 6:0.714216103133
1 7:0.856437056561
2 3:0.273470514625
2 4:0.912213806643
2 5:1.0
2 6:0.880869419812
2 7:0.900984166219
3 4:0.680606954533
3 5:0.757061563922
3 6:0.64352646713
3 7:0.725035747831
4 5:0.336824762282
4 6:0.255683377629
4 7:0.630396939847
5 6:0.223789247637
5 7:0.608715060769
6 7:0.648145282804
</hsp>