sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-1589-12621
X
>3U5H-5595-52622
X
>1K9M-A616-A2376
X
>1K8A-A616-A2376
X
>1KD1-A616-A2376
X
>1Q82-A616-A2376
X
>1N8R-A616-A2376
X
>1QVG-0616-02376
X
>3CPW-0616-02376
X
>1Q81-A616-A2376
X
>1M90-A616-A2376
X
>3CXC-0616-02376
X
>1Q86-A616-A2376
X
>1JJ2-0616-02376
X
>1NJI-A616-A2376
X
>1FFK-0615-02329
X
</seq>
<hsp>
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0 2:0.88137744357
0 3:0.811964553202
0 4:0.933788140235
0 5:0.721202178115
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13 14:0.100883971744
13 15:0.159583101998
14 15:0.129741999049
</hsp>