sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-0681-0720
X
>2QA4-0680-0719
X
>3CCJ-0681-0720
X
>3CCS-0681-0720
X
>3CCV-0681-0720
X
>2OTJ-0681-0720
X
>3G71-0681-0720
X
>3CCL-0681-0720
X
>3CCU-0681-0720
X
>3CD6-0681-0720
X
>3CC4-0681-0720
X
>3CC7-0681-0720
X
>3G6E-0681-0720
X
>3CCE-0681-0720
X
>1VQ6-0681-0720
X
>1VQ5-0681-0720
X
</seq>
<hsp>
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0 2:0.705019077255
0 3:0.575658513584
0 4:0.580030511793
0 5:0.575553658994
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13 15:0.430980045379
14 15:0.0552482260481
</hsp>