sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHK-A2544-A2518
X
>3OHJ-A2544-A2518
X
>3OI1-A2544-A2518
X
>3OHZ-A2544-A2518
X
>3F1H-A2698-A2672
X
>3F1F-A2698-A2672
X
>3OH7-A2544-A2518
X
>3OH5-A2544-A2518
X
>2J03-A2591-A2565
X
>2J01-A2591-A2565
X
</seq>
<hsp>
0 1:0.0922987471849
0 2:0.214121713833
0 3:0.221695749941
0 4:0.627858480209
0 5:0.632010555706
0 6:0.423324856228
0 7:0.380954147239
0 8:0.958739715779
0 9:0.948555713236
1 2:0.209338506857
1 3:0.196801575563
1 4:0.661841138415
1 5:0.667854899389
1 6:0.430965581197
1 7:0.380942678451
1 8:0.999994872984
1 9:0.989840431629
2 3:0.0682681913397
2 4:0.541364733971
2 5:0.542971450564
2 6:0.420870203602
2 7:0.383403378981
2 8:0.852924572241
2 9:0.843374133751
3 4:0.563092245209
3 5:0.566308946941
3 6:0.397618242319
3 7:0.356267913342
3 8:0.87889083683
3 9:0.868583190942
4 5:0.0552547663291
4 6:0.577820817496
4 7:0.566516897674
4 8:0.655211516623
4 9:0.647626494047
5 6:0.569380063266
5 7:0.56410851508
5 8:0.633456050027
5 9:0.626348507658
6 7:0.0814793371217
6 8:0.895978762722
6 9:0.882276347838
7 8:0.915116089142
7 9:0.901446675056
8 9:0.0274140375966
</hsp>