sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A904-A889
X
>3R8N-A904-A889
X
>3KNI-A1027-A1096
X
>3G9C-P41-P58
X
>3G9C-Q41-Q58
X
>2NZ4-R41-R58
X
>2NZ4-Q41-Q58
X
>2NZ4-S41-S58
X
>2NZ4-P41-P58
X
</seq>
<hsp>
0 1:0.0629419079449
0 2:0.999999176192
0 3:0.619802756605
0 4:0.651094337292
0 5:0.631208694981
0 6:0.642122566194
0 7:0.642467430003
0 8:0.639249196941
1 2:0.995449848003
1 3:0.605087457806
1 4:0.637504489215
1 5:0.616656446449
1 6:0.62722497411
1 7:0.626895026593
1 8:0.624303886768
2 3:0.622077052733
2 4:0.591002026481
2 5:0.602617785132
2 6:0.592267822132
2 7:0.597966058072
2 8:0.60202734969
3 4:0.0481074551543
3 5:0.0897978698938
3 6:0.089376852326
3 7:0.0837653438813
3 8:0.0912650658277
4 5:0.089080874485
4 6:0.0798404562898
4 7:0.0786204805694
4 8:0.0911858519295
5 6:0.0219579780105
5 7:0.0290828064174
5 8:0.0220780631673
6 7:0.0176605412652
6 8:0.0260617029794
7 8:0.0245240750285
</hsp>