sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3L3C-P41-P58
X
>2NZ4-Q47-R48
X
>3L3C-Q41-Q58
X
>3L3C-R41-R58
X
>3R8N-A814-A811
X
>3F1G-A794-A791
X
>3F1E-A794-A791
X
>2QA4-01797-01792
X
>1QVG-0501-0476
X
</seq>
<hsp>
0 1:0.791413558897
0 2:0.0794422851221
0 3:0.0586132638004
0 4:0.906144922161
0 5:0.908818358347
0 6:0.910751267154
0 7:0.988590855495
0 8:0.853717612815
1 2:0.793316943737
1 3:0.78497046852
1 4:1.0
1 5:0.995114591263
1 6:0.995911996804
1 7:0.874996496228
1 8:0.6810416768
2 3:0.056324296555
2 4:0.890521263547
2 5:0.893320467599
2 6:0.895033160023
2 7:0.957505358725
2 8:0.83381671673
3 4:0.883203256509
3 5:0.886696628401
3 6:0.888504837578
3 7:0.956469900411
3 8:0.828789098232
4 5:0.136973803197
4 6:0.138181828056
4 7:0.608764876317
4 8:0.92419813906
5 6:0.00677814945355
5 7:0.558504143411
5 8:0.867265177903
6 7:0.559670126013
6 8:0.867988989283
7 8:0.535687949042
</hsp>