sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3L3C-S41-S58
X
>3G9C-R47-Q48
X
>3G9C-Q47-R48
X
>3B4A-B27-B44
X
>2HO7-B27-B44
X
>2HO6-B27-B44
X
>3B4B-B27-B44
X
>2H0Z-B27-B44
X
</seq>
<hsp>
0 1:0.73857476695
0 2:0.999999673399
0 3:0.28971316933
0 4:0.333864772381
0 5:0.341026598913
0 6:0.258236454883
0 7:0.290479427037
1 2:0.564614339682
1 3:0.793222134775
1 4:0.814196133008
1 5:0.79948686368
1 6:0.791993486158
1 7:0.809339768351
2 3:0.912642515285
2 4:0.913358637815
2 5:0.915140068536
2 6:0.908255205852
2 7:0.900756923801
3 4:0.0860487845718
3 5:0.0722348321166
3 6:0.0640290542231
3 7:0.0564093922119
4 5:0.0526607662634
4 6:0.138493614261
4 7:0.102592783459
5 6:0.120949702348
5 7:0.0942859710386
6 7:0.058656725532
</hsp>