sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3EPH-F33-F30
X
>2ZXU-C35-C32
X
>2ZM5-C35-C32
X
>3FOZ-C35-C32
X
>3FOZ-D32-D29
X
>3EPH-E33-E30
X
>2BH2-D6-D11
X
>2BH2-C6-C11
X
</seq>
<hsp>
0 1:0.557630341419
0 2:0.572518132347
0 3:0.483507106254
0 4:0.462851535306
0 5:0.129864424799
0 6:0.790740673822
0 7:0.822327207108
1 2:0.120364995377
1 3:0.179151305604
1 4:0.195837627044
1 5:0.549784716795
1 6:0.927375294535
1 7:0.952008861984
2 3:0.183526997606
2 4:0.216723951948
2 5:0.580422339497
2 6:0.970268315903
2 7:0.999999042934
3 4:0.045771681104
3 5:0.493965747307
3 6:0.883934119657
3 7:0.917470545695
4 5:0.473517153336
4 6:0.862065895356
4 7:0.895796617855
5 6:0.736917841374
5 7:0.761144912292
6 7:0.0858950488016
</hsp>