sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A1026-A1095
X
>3G9C-R41-R58
X
>2H0W-B27-B44
X
>2H0S-B27-B44
X
>2GCV-B27-B44
X
>2H0X-B27-B44
X
>2GCS-B27-B44
X
</seq>
<hsp>
0 1:0.901578159942
0 2:0.978089668047
0 3:0.987046062926
0 4:0.995083112079
0 5:0.989765630639
0 6:0.999999477351
1 2:0.207778904178
1 3:0.211513491698
1 4:0.210907194415
1 5:0.19886953221
1 6:0.194058566035
2 3:0.0671936114776
2 4:0.0323236736863
2 5:0.0379312200019
2 6:0.050118507415
3 4:0.0672633293445
3 5:0.0575237010679
3 6:0.0678501661825
4 5:0.0361343490348
4 6:0.0398127166493
5 6:0.0230382704811
</hsp>