sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-A794-A705
X
>3KNI-A812-A683
X
>3CCM-01561-01549
X
>3CC7-01561-01549
X
>1K9M-A1561-A1549
X
>1YIJ-01561-01549
X
>3CCV-01561-01549
X
>3CPW-01561-01549
X
>1QVG-01561-01549
X
</seq>
<hsp>
0 1:0.870942467513
0 2:0.957601516293
0 3:0.875251263309
0 4:0.999998560007
0 5:0.97267837073
0 6:0.917887826141
0 7:0.950699998611
0 8:0.922526313707
1 2:0.895913325776
1 3:0.855121976679
1 4:0.914706427696
1 5:0.828050300321
1 6:0.871036090941
1 7:0.899487057642
1 8:0.791865945658
2 3:0.114367888033
2 4:0.0766472013519
2 5:0.115727048067
2 6:0.0773299356821
2 7:0.0719721393602
2 8:0.174753995935
3 4:0.162561885924
3 5:0.149667791703
3 6:0.0577490212618
3 7:0.123284253089
3 8:0.177488793827
4 5:0.103606424598
4 6:0.108303709189
4 7:0.059834095364
4 8:0.156599008401
5 6:0.10870329469
5 7:0.107866330763
5 8:0.0967843088377
6 7:0.0727357265764
6 8:0.147139854844
7 8:0.136249526222
</hsp>