sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-02148-0973
X
>2ZJR-X217-X232
X
>3OHZ-A1075-A1029
X
>1M90-A2148-A973
X
>2QEX-02148-0973
X
>1N8R-A2148-A973
X
>3KNK-A185-A172
X
>3R8S-A1197-A1234
X
</seq>
<hsp>
0 1:0.803753789305
0 2:0.53286631709
0 3:0.253365214105
0 4:0.257431634703
0 5:0.26327194027
0 6:0.836283991891
0 7:0.598085408866
1 2:0.396821905979
1 3:0.647381710779
1 4:0.629598723358
1 5:0.62088136435
1 6:0.29596167745
1 7:0.868395753085
2 3:0.404008725962
2 4:0.408131678975
2 5:0.392692010815
2 6:0.52670224389
2 7:0.498703656756
3 4:0.0964586835296
3 5:0.108301813696
3 6:0.629154317294
3 7:0.613279806525
4 5:0.154377720759
4 6:0.631326903233
4 7:0.621030096292
5 6:0.612015736733
5 7:0.634534073605
6 7:1.0
</hsp>