sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCQ-02001-01328
X
>3CCR-02001-01328
X
>3CC7-01486-01622
X
>1VQ7-01486-01622
X
>1YJW-01486-01622
X
>3CCS-01486-01622
X
>2QA4-01485-01621
X
</seq>
<hsp>
0 1:0.301463210748
0 2:0.74170581916
0 3:0.736154015183
0 4:0.734283483567
0 5:1.0
0 6:0.793302403056
1 2:0.531750905124
1 3:0.568143252501
1 4:0.531965598376
1 5:0.826785829883
1 6:0.672500146692
2 3:0.492052675485
2 4:0.445582464922
2 5:0.444665329036
2 6:0.611281685648
3 4:0.204779465393
3 5:0.544141032423
3 6:0.29179813042
4 5:0.458408147205
4 6:0.365851430177
5 6:0.608255802289
</hsp>