sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3D2X-A30-A60
X
>3D2V-A30-A60
X
>2GDI-X33-X63
X
>3D2X-B30-B60
X
>3D2G-A30-A60
X
>2CKY-B30-B60
X
>3D2V-B30-B60
X
>3D2G-B30-B60
X
>2CKY-A30-A60
X
>2HOJ-A30-A60
X
>2HOL-A30-A60
X
>2HOM-A31-A61
X
</seq>
<hsp>
0 1:0.526909369412
0 2:0.647412926206
0 3:0.350628859893
0 4:0.300007766094
0 5:0.850113644005
0 6:0.492387819515
0 7:0.492209912658
0 8:0.75457256886
0 9:0.752760107404
0 10:1.0
0 11:0.92323049255
1 2:0.190105153688
1 3:0.354453566956
1 4:0.456997152816
1 5:0.433761914286
1 6:0.205765321771
1 7:0.483373647358
1 8:0.306290828657
1 9:0.352477648447
1 10:0.52365802916
1 11:0.455155814769
2 3:0.432980614514
2 4:0.546643773081
2 5:0.275176433463
2 6:0.29179960226
2 7:0.570562278848
2 8:0.219886057282
2 9:0.337849017824
2 10:0.402458299217
2 11:0.466616503412
3 4:0.208638589605
3 5:0.594903811176
3 6:0.31424708793
3 7:0.443804685018
3 8:0.580907818708
3 9:0.626091230987
3 10:0.781965434279
3 11:0.750401006927
4 5:0.732246785823
4 6:0.396843812658
4 7:0.42763035435
4 8:0.697003140894
4 9:0.729050420329
4 10:0.903913888809
4 11:0.848643295984
5 6:0.520143385508
5 7:0.804463473084
5 8:0.352870436032
5 9:0.47993093589
5 10:0.360376888557
5 11:0.587974633895
6 7:0.332964510895
6 8:0.398131842883
6 9:0.368435709813
6 10:0.562490622732
6 11:0.52008384293
7 8:0.635202537625
7 9:0.602314474194
7 10:0.823101764064
7 11:0.724671905604
8 9:0.253269630172
8 10:0.360018340812
8 11:0.472483027891
9 10:0.348992881718
9 11:0.429775249114
10 11:0.419440192943
</hsp>