sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A643-A652
X
>2J03-A643-A652
X
>3OHJ-A643-A652
X
>3OHK-A643-A652
X
>3OI1-A643-A652
X
>3OH7-A643-A652
X
>3OHZ-A643-A652
X
>3OH5-A643-A652
X
>3OI1-A2207-A2123
X
>3OHZ-A2207-A2123
X
</seq>
<hsp>
0 1:0.0504834704131
0 2:0.9508985608
0 3:0.919856547307
0 4:0.76154542899
0 5:0.843454008062
0 6:0.787001399119
0 7:0.832448171795
0 8:0.708424857923
0 9:0.73058874513
1 2:0.929037071874
1 3:0.899588372822
1 4:0.738270761568
1 5:0.822365179794
1 6:0.762036068308
1 7:0.809687408093
1 8:0.709056856151
1 9:0.729665338316
2 3:0.0645479686845
2 4:0.277016818539
2 5:0.348149195892
2 6:0.264062894666
2 7:0.334309312509
2 8:0.879941636005
2 9:0.859574638596
3 4:0.25305743683
3 5:0.328489525702
3 6:0.250600376986
3 7:0.321822724621
3 8:0.859011092336
3 9:0.839959348497
4 5:0.392017344675
4 6:0.101854836901
4 7:0.377636842884
4 8:0.736208338452
4 9:0.732539653345
5 6:0.362630808718
5 7:0.0847766098962
5 8:1.0
5 9:0.994056847295
6 7:0.334354825228
6 8:0.800748988999
6 9:0.79502516166
7 8:0.987990419687
7 9:0.979652038576
8 9:0.10181519085
</hsp>