sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CME-0575-0558
X
>1MSY-A7-A19
X
>3R8T-A2646-A2658
X
>1VQ4-0345-0282
X
>1Q86-A345-A282
X
>3OHJ-A2484-A2496
X
>3OHK-A2484-A2496
X
>3OH5-A2484-A2496
X
>3OH7-A2484-A2496
X
>3KNI-A2559-A2571
X
</seq>
<hsp>
0 1:0.626329449984
0 2:0.616303209689
0 3:0.428670743615
0 4:0.451915441555
0 5:0.732543126183
0 6:0.70468929237
0 7:0.590364456389
0 8:0.572995753691
0 9:0.653351299877
1 2:0.864419412162
1 3:0.400991691806
1 4:0.254141619898
1 5:0.90011274033
1 6:0.894459896195
1 7:0.900923657321
1 8:0.889664484353
1 9:0.999997409704
2 3:0.676389577582
2 4:0.792955505572
2 5:0.594909399438
2 6:0.583498683884
2 7:0.603397700139
2 8:0.619744778769
2 9:0.624680565396
3 4:0.21063041991
3 5:0.643922271742
3 6:0.635199662479
3 7:0.678644267742
3 8:0.664520525724
3 9:0.774928588973
4 5:0.805914907388
4 6:0.79549446535
4 7:0.79559354749
4 8:0.779821126859
4 9:0.885214044183
5 6:0.0426487454173
5 7:0.326153970712
5 8:0.3355545823
5 9:0.579365195993
6 7:0.293551206569
6 8:0.300533570167
6 9:0.561620854578
7 8:0.0481590764787
7 9:0.397151286507
8 9:0.420097303522
</hsp>