sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2HOO-A34-A64
X
>3F1G-A373-A58
X
>3F1E-A373-A58
X
>1QTQ-B56-B14
X
>3F1F-A1291-A775
X
>3F1H-A1291-A775
X
>3OH5-A1221-A763
X
>3OH7-A1221-A763
X
>3OHK-A1221-A763
X
</seq>
<hsp>
0 1:0.289724178698
0 2:0.28930080393
0 3:0.904015955258
0 4:0.699506510537
0 5:0.694238413502
0 6:0.68001606913
0 7:0.684300439859
0 8:0.69374296221
1 2:0.00459429773647
1 3:0.999086589667
1 4:0.705667137835
1 5:0.701547645037
1 6:0.682495709564
1 7:0.684362954055
1 8:0.69553008406
2 3:1.0
2 4:0.706389989921
2 5:0.702248626493
2 6:0.683361530364
2 7:0.685202890032
2 8:0.696317850125
3 4:0.613419696607
3 5:0.616276484961
3 6:0.623689239289
3 7:0.630544139378
3 8:0.623716572643
4 5:0.00935124715282
4 6:0.0451483445316
4 7:0.0424014852529
4 8:0.0230298197816
5 6:0.0435611585163
5 7:0.0405098550408
5 8:0.0238391198684
6 7:0.0130050600606
6 8:0.0273227814618
7 8:0.021914832576
</hsp>