sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3D2X-B28-B44
X
>2CKY-A28-A44
X
>3D2X-A28-A44
X
>3D2V-B28-B44
X
>3D2G-A28-A44
X
>3D2G-B28-B44
X
>3D2V-A28-A44
X
</seq>
<hsp>
0 1:0.907840872334
0 2:0.46215797712
0 3:0.576180030274
0 4:1.0
0 5:0.807476238747
0 6:0.732863439586
1 2:0.653876100001
1 3:0.619680064648
1 4:0.802310617388
1 5:0.624500999054
1 6:0.696592340223
2 3:0.329472102144
2 4:0.696647460595
2 5:0.580007993602
2 6:0.436293657272
3 4:0.551155914637
3 5:0.332454935438
3 6:0.24992285822
4 5:0.411770041287
4 6:0.332243100155
5 6:0.302398503968
</hsp>