sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YFG-A18-A55
X
>3CCJ-01879-02290
X
>2ZJR-X619-X712
X
>3U5B-21370-21391
X
>1FJG-A950-A1292
X
>3R8O-A976-A1314
X
>3MDG-C4-C2
X
>3U5D-1216-1193
X
>3U5H-5216-5193
X
>3MDI-C5-C1
X
</seq>
<hsp>
0 1:0.993879682679
0 2:0.851099643682
0 3:1.0
0 4:0.884290599325
0 5:0.838479064109
0 6:0.786116143223
0 7:0.853953605167
0 8:0.811240573469
0 9:0.729586642199
1 2:0.351654706422
1 3:0.140181986784
1 4:0.167305289174
1 5:0.260145564579
1 6:0.421599991359
1 7:0.327778593533
1 8:0.268575027041
1 9:0.414612824459
2 3:0.36518153101
2 4:0.23102978416
2 5:0.397195966586
2 6:0.355808836084
2 7:0.213868505555
2 8:0.172141116443
2 9:0.316699762285
3 4:0.235990328989
3 5:0.336740250589
3 6:0.370731935908
3 7:0.358582642296
3 8:0.295787148296
3 9:0.372007525426
4 5:0.241066702772
4 6:0.380628380019
4 7:0.235817262523
4 8:0.138998931621
4 9:0.339894532024
5 6:0.428838104555
5 7:0.393467622824
5 8:0.300943819006
5 9:0.42971967021
6 7:0.312244671701
6 8:0.290528540158
6 9:0.140242396086
7 8:0.142776438043
7 9:0.272100285706
8 9:0.237748541651
</hsp>