sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2OJ3-B55-B56
X
>1U0B-A70-A71
X
>3U5H-52560-52562
X
>3CCJ-02314-02316
X
>3OI1-A2268-A2270
X
>3OHZ-A2268-A2270
X
>3CPW-0968-0969
X
>1VC7-B56-B57
X
>1VC0-B55-B56
X
>1SJ3-R55-R56
X
</seq>
<hsp>
0 1:0.559802058498
0 2:0.536399465721
0 3:0.445895565536
0 4:0.675853973367
0 5:0.648524197221
0 6:0.937093413587
0 7:0.714035031818
0 8:0.868016245886
0 9:0.851711107293
1 2:0.732082101625
1 3:0.709324514173
1 4:0.739598241003
1 5:0.75854474776
1 6:0.770033769402
1 7:0.893459696943
1 8:1.0
1 9:0.935128206872
2 3:0.311649569004
2 4:0.256172167088
2 5:0.231555420234
2 6:0.599922626397
2 7:0.726661211442
2 8:0.68618032829
2 9:0.641174585516
3 4:0.363616482309
3 5:0.309249770281
3 6:0.724001860904
3 7:0.644272320906
3 8:0.710738837257
3 9:0.662178347311
4 5:0.0986961798446
4 6:0.41273221689
4 7:0.668932760961
4 8:0.599687771683
4 9:0.519897420367
5 6:0.470867592584
5 7:0.646352111562
5 8:0.601355899481
5 9:0.52656213542
6 7:0.78078317741
6 8:0.66289195903
6 9:0.559523483778
7 8:0.419153518589
7 9:0.414260774373
8 9:0.135133411227
</hsp>