sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A1934-A1936
X
>3F1F-A1934-A1936
X
>3OHJ-A1856-A1858
X
>2ZJR-X1805-X1807
X
>2J01-A1856-A1858
X
>2J03-A1856-A1858
X
>3OH7-A1856-A1858
X
>3OH5-A1856-A1858
X
>1SJF-B56-B58
X
</seq>
<hsp>
0 1:0.0663093312444
0 2:0.618651913185
0 3:0.564489909868
0 4:0.617235794166
0 5:0.636014033278
0 6:0.609460915877
0 7:0.620948771765
0 8:0.999990487473
1 2:0.5924556416
1 3:0.538004962383
1 4:0.574334626204
1 5:0.592699909474
1 6:0.577353686551
1 7:0.590724263986
1 8:0.975028534422
2 3:0.614834833907
2 4:0.364532686832
2 5:0.370999302274
2 6:0.424136709008
2 7:0.473422112349
2 8:0.566288516941
3 4:0.589261257092
3 5:0.590067451562
3 6:0.629344662912
3 7:0.626724529574
3 8:0.872766653524
4 5:0.0360773710175
4 6:0.263769630804
4 7:0.291142396064
4 8:0.586270730775
5 6:0.270937801619
5 7:0.298300447455
5 8:0.569011004198
6 7:0.08162540909
6 8:0.654391306277
7 8:0.677087876995
</hsp>