sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCQ-01133-01159
X
>3R8N-A395-A545
X
>3CMA-01133-01159
X
>3R8O-A395-A545
X
>2VQF-A387-A525
X
>1N32-A387-A525
X
>2VQE-A387-A525
X
>2UUB-A387-A525
X
>2UUA-A387-A525
X
>1XMQ-A387-A525
X
>2UXC-A387-A525
X
>1FJG-A387-A525
X
</seq>
<hsp>
0 1:0.939551451527
0 2:0.346119825772
0 3:0.712376579718
0 4:0.820894218621
0 5:0.831432015524
0 6:0.805042474574
0 7:0.876266088526
0 8:0.892509421565
0 9:0.824797906161
0 10:0.810139711927
0 11:0.885786875394
1 2:0.999997558593
1 3:0.559019709422
1 4:0.662016526285
1 5:0.460279354146
1 6:0.692055650979
1 7:0.465119982827
1 8:0.480739616717
1 9:0.456275827164
1 10:0.592804410767
1 11:0.542780991752
2 3:0.617162397707
2 4:0.754479122848
2 5:0.857157976129
2 6:0.721887234819
2 7:0.848722448954
2 8:0.856887291188
2 9:0.801316494784
2 10:0.766250766322
2 11:0.880148245256
3 4:0.333460915001
3 5:0.400803600257
3 6:0.314810374829
3 7:0.324959245001
3 8:0.326620339969
3 9:0.298053619268
3 10:0.300153802332
3 11:0.400160745815
4 5:0.322198862358
4 6:0.162993059757
4 7:0.29481598744
4 8:0.229218172123
4 9:0.231535070258
4 10:0.144573658567
4 11:0.210185549386
5 6:0.348072374832
5 7:0.168471950795
5 8:0.208057741464
5 9:0.156702944645
5 10:0.212946561208
5 11:0.161677172581
6 7:0.328266696919
6 8:0.299680537893
6 9:0.270343267454
6 10:0.17258147473
6 11:0.278321295583
7 8:0.120040295151
7 9:0.130262243921
7 10:0.185239522444
7 11:0.186475914756
8 9:0.105077405986
8 10:0.176287898859
8 11:0.143607192666
9 10:0.158800134579
9 11:0.151578040575
10 11:0.149471330171
</hsp>