sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X2006-X2005
X
>3U5H-5243-5242
X
>3U5F-61248-61247
X
>3R8S-A2174-A2173
X
>2NZ4-R114-R113
X
>3R8N-V59-V58
X
</seq>
<hsp>
0 1:0.544450770908
0 2:0.752753658397
0 3:0.666607413456
0 4:0.414926422056
0 5:0.93463747483
1 2:0.405320297885
1 3:0.486923910167
1 4:0.384715811578
1 5:0.858082614303
2 3:0.243608824884
2 4:0.65938159243
2 5:0.555765027301
3 4:0.663704832259
3 5:0.418423711078
4 5:0.9999968164
</hsp>