sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3HL2-E22-E21
X
>3KNK-A1113-A1112
X
>2ZJR-X2135-X2134
X
>3R8O-A435-A434
X
>3KNI-A1247-A1246
X
>3KNK-A166-A165
X
>3R8S-A1098-A1097
X
>2J02-A153-A152
X
>2J00-A153-A152
X
>1MHK-L6-L5
X
</seq>
<hsp>
0 1:0.365056852431
0 2:0.673776398419
0 3:0.480743998376
0 4:0.622687909261
0 5:0.460707717716
0 6:0.439173170657
0 7:0.178655476723
0 8:0.175829886803
0 9:0.398041148612
1 2:0.532062648701
1 3:0.527810443893
1 4:0.531614921195
1 5:0.364568527569
1 6:0.553882017085
1 7:0.441129262661
1 8:0.441167803727
1 9:0.642709544429
2 3:0.394194145804
2 4:0.145308524987
2 5:0.303068162886
2 6:0.544695892793
2 7:0.740787775747
2 8:0.740331078634
2 9:1.0
3 4:0.296269618786
3 5:0.305847014178
3 6:0.221544859657
3 7:0.518402600318
3 8:0.516575923392
3 9:0.761323332743
4 5:0.283466388419
4 6:0.450242472528
4 7:0.684680359398
4 8:0.683549604168
4 9:0.937685141039
5 6:0.407238315003
5 7:0.527143825951
5 8:0.525453534545
5 9:0.794641467806
6 7:0.512575741232
6 8:0.509236150304
6 9:0.723097435659
7 8:0.00671967054011
7 9:0.279476089132
8 9:0.280567285444
</hsp>