sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-541-540
X
>3U5D-141-140
X
>3CMA-02298-02297
X
>3F1G-A254-A253
X
>3F1E-A254-A253
X
>3KNH-A160-A159
X
>3R8O-A995-A994
X
>3KNI-A3-A2
X
>3R8T-A2400-A2399
X
</seq>
<hsp>
0 1:0.0260019571926
0 2:0.917033950267
0 3:0.688475003743
0 4:0.687017819635
0 5:0.954538056966
0 6:0.870906233172
0 7:0.818667218173
0 8:0.998291835473
1 2:0.918586501982
1 3:0.689692916226
1 4:0.688223468636
1 5:0.956150857963
1 6:0.872758900109
1 7:0.820249802484
1 8:1.0
2 3:0.323663938326
2 4:0.323219828491
2 5:0.0868990426696
2 6:0.124845221058
2 7:0.200942709891
2 8:0.118585534992
3 4:0.00501849324378
3 5:0.397680828959
3 6:0.231603113053
3 7:0.165386387451
3 8:0.42463040478
4 5:0.397286398423
4 6:0.231885336317
4 7:0.166445310781
4 8:0.424691450855
5 6:0.202141879503
5 7:0.273945245459
5 8:0.0608822854366
6 7:0.0886791812403
6 8:0.21959469806
7 8:0.29168964388
</hsp>