sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2BU1-R8-R7
X
>5MSF-S7-S6
X
>2C4Q-R8-R7
X
>2BQ5-S8-S7
X
>3R8T-A1490-A1489
X
>1ZDJ-S3-S2
X
>2C50-S6-S5
X
>1ZDH-S6-S5
X
</seq>
<hsp>
0 1:0.482628893065
0 2:0.380859291807
0 3:1.0
0 4:0.649451621261
0 5:0.828341954419
0 6:0.566529503664
0 7:0.702020798358
1 2:0.190575103095
1 3:0.732305233035
1 4:0.37546402491
1 5:0.438404462977
1 6:0.212405317502
1 7:0.383991369542
2 3:0.667153631028
2 4:0.480953452313
2 5:0.466597058787
2 6:0.204785494553
2 7:0.352202685218
3 4:0.947267966252
3 5:0.446474381186
3 6:0.570520722466
3 7:0.425523213346
4 5:0.62800629921
4 6:0.499046330248
4 7:0.666862727131
5 6:0.293494298515
5 7:0.212122227255
6 7:0.197308765763
</hsp>