sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X1415-X1414
X
>3L3C-Q58-Q57
X
>3G9C-S58-S57
X
>2NZ4-Q58-Q57
X
>2NZ4-S58-S57
X
>3L3C-P58-P57
X
>2NZ4-P58-P57
X
</seq>
<hsp>
0 1:0.829069624899
0 2:0.99336991301
0 3:0.750333780497
0 4:0.826038444305
0 5:1.0
0 6:0.829035907584
1 2:0.356529121351
1 3:0.178817161261
1 4:0.233713132308
1 5:0.343102325992
1 6:0.230814063918
2 3:0.474109257657
2 4:0.476819415086
2 5:0.394396451579
2 6:0.495392630183
3 4:0.157662425489
3 5:0.386451284028
3 6:0.20193262172
4 5:0.291091671388
4 6:0.120587951391
5 6:0.259749011919
</hsp>