sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3RKF-D7-D6
X
>3G8T-P58-P57
X
>3R8S-A1547-A1546
X
>3R8O-A396-A395
X
>3L3C-S58-S57
X
>3L3C-R58-R57
X
>2NZ4-R58-R57
X
</seq>
<hsp>
0 1:0.674080511448
0 2:0.353322931491
0 3:1.0
0 4:0.722656303189
0 5:0.710284937554
0 6:0.727530758331
1 2:0.440599221535
1 3:0.521314017904
1 4:0.0963963304797
1 5:0.0684744921695
1 6:0.0775369504187
2 3:0.780126159186
2 4:0.492154996784
2 5:0.477706742838
2 6:0.494905827979
3 4:0.528386265865
3 5:0.515772234121
3 6:0.491358930381
4 5:0.0501643428847
4 6:0.0917718131945
5 6:0.0492368135857
</hsp>