sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A1774-A751
X
>3KNK-A181-A180
X
>2J03-A296-A295
X
>2J01-A296-A295
X
>3F1H-A303-A302
X
>3F1F-A303-A302
X
</seq>
<hsp>
0 1:0.948745901808
0 2:0.950008921717
0 3:0.949599694973
0 4:0.999004738355
0 5:0.999998752943
1 2:0.111647341639
1 3:0.113042373416
1 4:0.124186694292
1 5:0.124871579008
2 3:0.00326944322669
2 4:0.069371069961
2 5:0.0689906193991
3 4:0.0690913939915
3 5:0.0687911160771
4 5:0.00591858667364
</hsp>