sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHZ-A1847-A1846
X
>3OI1-A1847-A1846
X
>2EEU-A48-A47
X
>3OH5-A187-A186
X
>3OH7-A187-A186
X
>2QA4-0202-0201
X
>3OHZ-A187-A186
X
>3OI1-A187-A186
X
>3R8S-A1260-A1259
X
>2J03-A1216-A1215
X
</seq>
<hsp>
0 1:0.0921627350259
0 2:0.581804894344
0 3:0.691277380292
0 4:0.755944131112
0 5:0.713817592614
0 6:0.813269225693
0 7:0.852793003871
0 8:0.501825173846
0 9:0.999994873766
1 2:0.554913046409
1 3:0.706029304735
1 4:0.77332228293
1 5:0.694065074312
1 6:0.830791769018
1 7:0.867161308747
1 8:0.49515396279
1 9:0.956207730514
2 3:0.496185685365
2 4:0.56162042434
2 5:0.440669363838
2 6:0.645326082484
2 7:0.635480330211
2 8:0.411023947033
2 9:0.734545961895
3 4:0.123962146848
3 5:0.47199453476
3 6:0.235695701294
3 7:0.261075775519
3 8:0.436631240458
3 9:0.807401142751
4 5:0.544599928124
4 6:0.180276525188
4 7:0.180928078577
4 8:0.538231445593
4 9:0.874033380923
5 6:0.553440222993
5 7:0.567866249141
5 8:0.43201746209
5 9:0.524271691791
6 7:0.114741871944
6 8:0.607803003137
6 9:0.876089755499
7 8:0.655908323958
7 9:0.884079601706
8 9:0.735209264911
</hsp>