sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3DH3-H6-H5
X
>3F1G-A927-A926
X
>1FJG-A191-A190
X
>3CCR-02508-02507
X
>1SJ3-R12-R11
X
>3R8T-A1582-A1581
X
>3U5D-1708-1707
X
>3KNI-A1237-A1236
X
>3F1G-A84-A83
X
>3IQR-A16-A15
X
</seq>
<hsp>
0 1:0.207355203037
0 2:0.570886411666
0 3:0.435130544714
0 4:0.353371968765
0 5:0.486713379598
0 6:0.575862990048
0 7:0.405805149586
0 8:0.377170280846
0 9:0.399886419698
1 2:0.589791713462
1 3:0.420286524998
1 4:0.346524138561
1 5:0.501977622063
1 6:0.503302294402
1 7:0.336019461081
1 8:0.318568418606
1 9:0.32996532796
2 3:0.378499307728
2 4:0.282355626561
2 5:0.328433565288
2 6:0.999999718677
2 7:0.565691097033
2 8:0.819339555072
2 9:0.596046190171
3 4:0.177777979062
3 5:0.282024181125
3 6:0.834995855688
3 7:0.316915285796
3 8:0.657869009256
3 9:0.380769561994
4 5:0.289432839502
4 6:0.769449015728
4 7:0.337359046666
4 8:0.587707338127
4 9:0.362455411354
5 6:0.965419871005
5 7:0.421827011377
5 8:0.748325157503
5 9:0.513531795368
6 7:0.645362824379
6 8:0.254456677098
6 9:0.551969348107
7 8:0.456638678214
7 9:0.165438895783
8 9:0.370160120277
</hsp>