sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A1041-A1040
X
>1G59-B69-B68
X
>2QA4-01592-01591
X
>1FJG-A1289-A1288
X
>3KNI-B21-B20
X
>1G59-D69-D68
X
>3CCJ-02711-02710
X
>3KNI-A340-A339
X
>1VC0-B12-B11
X
</seq>
<hsp>
0 1:0.363544407651
0 2:0.932016223516
0 3:0.814159964419
0 4:0.3725801768
0 5:0.365313082091
0 6:0.650865843376
0 7:0.341152123789
0 8:0.786023972723
1 2:0.859531550857
1 3:0.889707624156
1 4:0.308873071945
1 5:0.268071657884
1 6:0.462314959753
1 7:0.233105340804
1 8:0.782328216183
2 3:0.527865432613
2 4:0.635331452352
2 5:0.670495250331
2 6:0.448986897215
2 7:0.972979951527
2 8:0.370951560098
3 4:0.694644058931
3 5:0.669771508402
3 6:0.690846332588
3 7:1.0
3 8:0.213158040206
4 5:0.253710284535
4 6:0.349458656972
4 7:0.422464600829
4 8:0.589217799511
5 6:0.336051932993
5 7:0.386169504552
5 8:0.565572824685
6 7:0.59206252647
6 8:0.515125240787
7 8:0.918309773308
</hsp>