sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-51461-51460
X
>2ZJR-X794-X793
X
>3KNI-A1284-A1283
X
>3F1F-A1348-A1347
X
>3F1H-A1348-A1347
X
>3OHZ-A1278-A1277
X
</seq>
<hsp>
0 1:1.0
0 2:0.114757526692
0 3:0.0937176621126
0 4:0.093410314196
0 5:0.0671319010292
1 2:0.918428412907
1 3:0.990218634079
1 4:0.988081683783
1 5:0.987559345834
2 3:0.123828860519
2 4:0.120425899609
2 5:0.0995352485156
3 4:0.00767458218981
3 5:0.0576422032761
4 5:0.0560705681354
</hsp>