sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A878-A877
X
>1KD1-A2435-A2434
X
>3ADB-D3-D2
X
>2J03-B42-B41
X
>2GCS-B66-B65
X
>3B4B-B66-B65
X
</seq>
<hsp>
0 1:0.876226523772
0 2:0.640647127563
0 3:1.0
0 4:0.857680073927
0 5:0.889813102849
1 2:0.612356745787
1 3:0.44937504515
1 4:0.667659574022
1 5:0.667588340343
2 3:0.752752416159
2 4:0.466182648815
2 5:0.533319486137
3 4:0.69415996275
3 5:0.67741580816
4 5:0.114406190731
</hsp>