sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2DU4-C65-C64
X
>3OI1-A432-A431
X
>1DRZ-B56-B55
X
>2J03-A1980-A1979
X
>2UXC-A1380-A1379
X
>2QA4-01928-01927
X
</seq>
<hsp>
0 1:0.346175103816
0 2:0.565992811163
0 3:0.275697699125
0 4:0.974358099061
0 5:0.890321840317
1 2:0.511604158033
1 3:0.373073265737
1 4:0.999992599198
1 5:0.894095536215
2 3:0.356173954589
2 4:0.663225450617
2 5:0.598940859301
3 4:0.792307898357
3 5:0.725873584882
4 5:0.25075552454
</hsp>