sequences=5
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A1503-A1500
X
>3U5B-21750-21747
X
>3U5F-61762-61759
X
>3F1G-A1477-A1474
X
>3F1E-A1477-A1474
X
</seq>
<hsp>
0 1:0.762028318731
0 2:0.668654768553
0 3:0.780209418394
0 4:0.792820031697
1 2:0.755129279852
1 3:0.994051513283
1 4:0.999999672692
2 3:0.656543857613
2 4:0.675298791388
3 4:0.0453132132321
</hsp>