sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5F-61623-61759
X
>3R8S-A681-A465
X
>3CME-0857-0854
X
>3CCS-0857-0854
X
>1VQ7-0857-0854
X
>3CMA-0857-0854
X
>1VQM-0857-0854
X
>1VQ8-0857-0854
X
>1VQK-0857-0854
X
>3CCU-0857-0854
X
</seq>
<hsp>
0 1:1.0
0 2:0.567100017131
0 3:0.501971978291
0 4:0.510027494151
0 5:0.544232731018
0 6:0.450074087393
0 7:0.455385846482
0 8:0.472357700763
0 9:0.538027215369
1 2:0.914244738076
1 3:0.783284739829
1 4:0.848423411391
1 5:0.801489210913
1 6:0.848406727426
1 7:0.817523609622
1 8:0.832943517452
1 9:0.853313627936
2 3:0.362121354141
2 4:0.276437332036
2 5:0.221373469872
2 6:0.297589292344
2 7:0.265066127508
2 8:0.288158885302
2 9:0.273581229968
3 4:0.148585573569
3 5:0.294162191484
3 6:0.117033748983
3 7:0.142678735935
3 8:0.102027211597
3 9:0.132385879395
4 5:0.193335755303
4 6:0.0915568697999
4 7:0.0817486351785
4 8:0.104720621894
4 9:0.146296754483
5 6:0.249886205416
5 7:0.194497721809
5 8:0.254475727937
5 9:0.284719491787
6 7:0.0644658098589
6 8:0.0490543430286
6 9:0.126193271335
7 8:0.0751615534922
7 9:0.149210506323
8 9:0.0935615763433
</hsp>