sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A199-A467
X
>1L8V-A97-A94
X
>1L8V-B97-B94
X
>3U5B-21486-21545
X
>2J01-A1576-A1686
X
>2J03-A1576-A1686
X
>3R8O-A949-A968
X
>2J01-A479-A691
X
>2J00-A1314-V41
X
>2J03-A479-A691
X
>3KNK-A479-A690
X
</seq>
<hsp>
0 1:0.3500711452
0 2:0.342993677395
0 3:0.614290789408
0 4:0.98129710359
0 5:0.977680568288
0 6:0.62867257464
0 7:0.491178417613
0 8:0.73600396617
0 9:0.503211479231
0 10:0.636698179665
1 2:0.0111014625633
1 3:0.81799866417
1 4:0.999999314516
1 5:0.999258705889
1 6:0.704109353075
1 7:0.683218914781
1 8:0.890802488496
1 9:0.6924557734
1 10:0.769364424125
2 3:0.810314656746
2 4:0.996682663333
2 5:0.995898114319
2 6:0.698245069637
2 7:0.675128473318
2 8:0.883540054037
2 9:0.684341674518
2 10:0.762339541919
3 4:0.948872118944
3 5:0.94040927322
3 6:0.638901898352
3 7:0.322073328473
3 8:0.262863442209
3 9:0.332345157858
3 10:0.607945268827
4 5:0.0154342383712
4 6:0.712011664303
4 7:0.815636180281
4 8:0.997344860997
4 9:0.800680849865
4 10:0.742319452792
5 6:0.70791028044
5 7:0.808866807883
5 8:0.990198874965
5 9:0.794071596623
5 10:0.738155300741
6 7:0.38149991093
6 8:0.579090289362
6 9:0.375424928419
6 10:0.294605151931
7 8:0.359281398516
7 9:0.0289029929196
7 10:0.309493528263
8 9:0.364724294114
8 10:0.577099367905
9 10:0.290534363958
</hsp>