sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1XMQ-A1247-A1253
X
>3U5B-21494-21500
X
>2UXC-A1252-A1258
X
>3R8N-A1274-A1280
X
>3U5F-61506-61512
X
>2UUB-A1252-A1258
X
>2VQE-A1252-A1258
X
>1FJG-A1252-A1258
X
</seq>
<hsp>
0 1:0.694922506622
0 2:0.460418654686
0 3:0.546596341854
0 4:0.740454758725
0 5:0.392700019721
0 6:0.28430631761
0 7:0.384114025466
1 2:0.836325830487
1 3:0.448306086684
1 4:0.42778120813
1 5:0.568220393662
1 6:0.822252570503
1 7:0.439172345094
2 3:0.496924508093
2 4:1.0
2 5:0.605156811982
2 6:0.397810342196
2 7:0.623081801796
3 4:0.711369388708
3 5:0.509469889114
3 6:0.627503754708
3 7:0.392773174536
4 5:0.58792901683
4 6:0.83221192441
4 7:0.498433140968
5 6:0.404949519513
5 7:0.30917229067
6 7:0.490341762869
</hsp>