sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNH-A1243-A1249
X
>3U5B-21470-21477
X
>3U5B-21583-21449
X
>3U5F-61482-61489
X
>1XJR-A27-A30
X
>1XJR-A18-A19
X
</seq>
<hsp>
0 1:0.999999865091
0 2:0.565164513068
0 3:0.982796679311
0 4:0.538853801052
0 5:0.603480344119
1 2:0.59624113687
1 3:0.118043586933
1 4:0.548569596051
1 5:0.525683646415
2 3:0.579777370489
2 4:0.345325249946
2 5:0.317562406722
3 4:0.538604702697
3 5:0.517476013899
4 5:0.154893378934
</hsp>