sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2UXC-A1231-A1234
X
>2VQE-A1231-A1234
X
>2UUA-A1231-A1234
X
>1N32-A1231-A1234
X
>1XMQ-A1226-A1229
X
>3R8N-A1253-A1256
X
>2UUB-A1231-A1234
X
>1FJG-A1231-A1234
X
</seq>
<hsp>
0 1:0.353132206468
0 2:0.364797022419
0 3:0.29758599436
0 4:0.225948747825
0 5:0.999995944373
0 6:0.71621965331
0 7:0.853695108257
1 2:0.310228075292
1 3:0.310568394278
1 4:0.461243506908
1 5:0.956730838584
1 6:0.719087049702
1 7:0.860925129504
2 3:0.173991043189
2 4:0.444390346578
2 5:0.778738905283
2 6:0.474881496993
2 7:0.622188743023
3 4:0.320989247594
3 5:0.790850311885
3 6:0.496628888324
3 7:0.653263700497
4 5:0.938455462035
4 6:0.658878950721
4 7:0.785422064164
5 6:0.424123753123
5 7:0.382567611874
6 7:0.171741798383
</hsp>